sample_id	r1_filename	r2_filename	pipeline_status	input_validation_status	raw_qc_status	raw_qc_result	trimming_status	trimmed_qc_status	trimmed_qc_result	multiqc_status	assembly_status	quast_status	annotation_status	annotation_reason	input_read_pairs	paired_reads_after_trimming	paired_read_survival_percent	assembly_total_length	number_of_contigs	largest_contig	n50	l50	gc_percent	cds_count	pipeline_start_time	pipeline_completion_time	pipeline_version
Vibrio-Al	Vibrio-Al_L001_R1_001.fastq	Vibrio-Al_L001_R2_001.fastq	COMPLETED	COMPLETED	COMPLETED	FAIL	COMPLETED	COMPLETED	FAIL	COMPLETED	COMPLETED	COMPLETED	COMPLETED	NA	252200	170848	67.743	4803858	2236	44753	2964	484	44.57	4162	2026-09-14T13:41:12.598599722Z	2026-09-14T13:41:13.444438Z	1.0.0