COMPARATIVE GENOMICS
Multi-genome comparison
Compare 3–20 bacterial genome assemblies to identify core, accessory and genome-specific gene families.
How the comparison works
Provide 3–20 uncompressed .fasta, .fa or .fna assemblies, up to 25,000,000 bytes each, with distinct labels and input hashes. Each assembly must contain 100,000–20,000,000 bases and at most 10,000 contigs. Research use only.
Select a genome collection
Add at least three distinct assembled genomes and review their labels in the workspace.
Upload to secure staging
Files upload directly to Google Drive and can wait safely while the compute workstation is off.
Compare gene families
Prokka annotates every assembly consistently; Panaroo infers gene families and their presence across genomes.
Read and download results
The report includes a real heatmap and complete downloadable matrix. A checksummed ZIP contains the result tables.