Pairwise genome comparison

Compare an isolate with another bacterial genome or a reference to examine similarity, shared genes and functional differences.

OperationalCompare two assemblies, then review your report and downloadable results.

How the comparison works

Provide exactly two bacterial assemblies as uncompressed .fasta, .fa or .fna files, up to 25,000,000 bytes each. Each assembly must contain 100,000–20,000,000 bases and at most 10,000 contigs. Research use only.

Select two assemblies

Label Genome A and Genome B, then review the project in the workspace.

Upload to secure staging

Files upload directly to Google Drive. Analysis can wait in the queue while the compute workstation is off.

Run scientific analysis

Assembly statistics, observed ANI, Bakta annotation and thresholded BLASTP protein matches are calculated.

Read and download results

A report and checksummed ZIP remain available from your Account and Status pages.